PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g032140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 304aa    MW: 32922.1 Da    PI: 5.7789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g032140.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-10153197554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h+++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  Sopen09g032140.1 153 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 197
                       99***********************8.....6****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-16146208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.03E-11146202No hitNo description
PROSITE profilePS5088816.323148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-16150208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7153197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAANQPEGYA DDFLEQILAI PSYSGLPVAD VGTPSETTSF TSASAVSHLN SAAAAGLQQP  60
LFPLGLSLDN GRDDVGDAGP YAVKHERDGM NIGNLYAGLE HLQSHAVRHS VPSVHHVQPF  120
QGPPTTSTTV TVPHPPSIRP RVRARRGQAT DPHSIAERLR RERISERIKA LQELVPSCNK  180
TDRAAMLDEI LDYVKFLRLQ VKVLSMSRLG GASAVAQLVA DIPLQSVEGD SGESRSNQHI  240
WDKWSNVDTE REVAKLMEED VGAAMQYLQS KSLCIMPISL AALIYPTQQP DDQSLVKPEA  300
AAPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-140HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087272.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227686e-86UNE12_ARATH; Transcription factor UNE12
TrEMBLK4CVU80.0K4CVU8_SOLLC; Uncharacterized protein
STRINGSolyc09g083220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.26e-78bHLH family protein